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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15384139_15386811_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15384139 - 15386811
Intron Length:
2673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAGAAC
5'SS Class:
major
3'SS Sequence:
TTTCCCTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCACAA
U12 Branch Point Sequence:
CCCCTCACAACC
Flanking Amino Acid:
MEQRMPLILEGRSEMDKYLS
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
71.5
33.6
Major BPS
56.2
0.15
1
64.6
32.2
Major PPT
82
0.72
0.7
77.2
24.7
Minor 5ss
26.5
-2.7
3.1
33
42.4
Minor BPS
43.9
-0.4
1.8
48.2
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019319
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019733
15377763 - 15395236
17474