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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15442075_15447336_R

Intron Information:

Intron Rank:
145315
Intron Class:
major
Intron Phase:
Intron Coordinates:
15442075 - 15447336
Intron Length:
5262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGATCA
5'SS Class:
major
3'SS Sequence:
CATTTGTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ATTTCTTCACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
64.4
36.2
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
74.4
0.55
1
68.9
41.6
Minor 5ss
44.8
-0.6
2.8
57.7
46.5
Minor BPS
52.6
0.16
1.9
75.88
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025586
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042600
15442035 - 15451293
9259