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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15446254_15447336_R

Intron Information:

Intron Rank:
145306
Intron Class:
major
Intron Phase:
Intron Coordinates:
15446254 - 15447336
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGATCA
5'SS Class:
major
3'SS Sequence:
CATCTGGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTGAT
U12 Branch Point Sequence:
GTTTCGTGATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
64.4
36.2
Major BPS
68.7
0.46
1.3
59.3
47.1
Major PPT
72.2
0.5
1
64.8
40.9
Minor 5ss
44.8
-0.6
2.8
57.7
46.5
Minor BPS
48.1
-0.1
2.4
68.17
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025586
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030489
15446208 - 15452119
5912