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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15447440_15448640_R

Intron Information:

Intron Rank:
145304
Intron Class:
major
Intron Phase:
Intron Coordinates:
15447440 - 15448640
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGTG
5'SS Class:
major
3'SS Sequence:
TCATTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCTTGTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
68.2
42.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.4
0.75
0.8
77
37
Minor 5ss
31.3
-2.1
3.3
40.4
45.9
Minor BPS
48.6
-0
2.4
74.4
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025586
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036383
15439927 - 15452119
12193
ENSAPLT00000030489
15446208 - 15452119
5912
ENSAPLT00000028620
15446438 - 15451293
4856
ENSAPLT00000042600
15442035 - 15451293
9259