About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15448719_15448910_R

Intron Information:

Intron Rank:
145314
Intron Class:
major
Intron Phase:
Intron Coordinates:
15448719 - 15448910
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACTTTTG
5'SS Class:
major
3'SS Sequence:
TTCTTTTTGGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATTCCGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
64.5
42.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81
0.7
0.9
80.5
31.5
Minor 5ss
43
-0.8
3
55.2
44.3
Minor BPS
44.8
-0.3
1.9
63.54
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025586
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039480
15448621 - 15449335
715