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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15448719_15451109_R

Intron Information:

Intron Rank:
145305
Intron Class:
major
Intron Phase:
Intron Coordinates:
15448719 - 15451109
Intron Length:
2391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TTCTTTTTGGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATTCCGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
77.7
33.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81
0.7
0.9
80.5
31.5
Minor 5ss
42
-0.9
3
54.7
43.6
Minor BPS
44.8
-0.3
1.9
63.54
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025586
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030489
15446208 - 15452119
5912
ENSAPLT00000028620
15446438 - 15451293
4856
ENSAPLT00000042600
15442035 - 15451293
9259
ENSAPLT00000036383
15439927 - 15452119
12193