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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15456211_15457210_R

Intron Information:

Intron Rank:
145970
Intron Class:
major
Intron Phase:
Intron Coordinates:
15456211 - 15457210
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
AGTACTTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.06
0.8
83.5
27.7
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
84.7
0.78
0.9
85.4
29.3
Minor 5ss
22.2
-3.2
3.8
31.6
42.4
Minor BPS
57.7
0.24
1.7
67.23
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025950
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019220
15456198 - 15469773
13576