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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15458311_15468461_R

Intron Information:

Intron Rank:
145972
Intron Class:
major
Intron Phase:
Intron Coordinates:
15458311 - 15468461
Intron Length:
10151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTCTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTTCCTCTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
72.7
0.56
1
75
30.1
Major PPT
79.8
0.67
0.9
72.7
37
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
55.2
0.24
2.1
82.08
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025950
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019220
15456198 - 15469773
13576