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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15468636_15468848_R

Intron Information:

Intron Rank:
145973
Intron Class:
major
Intron Phase:
Intron Coordinates:
15468636 - 15468848
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTCATTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTATCTGAGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81.3
0.7
0.8
72.7
37.5
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
47.3
-0.2
2.3
66.4
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025950
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033829
15464703 - 15468958
4256
ENSAPLT00000019220
15456198 - 15469773
13576