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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_154686_155153_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
154686 - 155153
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTGTA
5'SS Class:
major
3'SS Sequence:
TTCCCATCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCCCATCATC
Flanking Amino Acid:
REEKHQKQMERALLENEKKK
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
73.6
37.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72.4
0.5
0.9
71
33.4
Minor 5ss
31.2
-2.1
3.3
40.7
45.6
Minor BPS
53.9
0.1
2
72.87
38.1

Associated Gene:

Gene:
MSN
Ensembl Gene ID:
ENSAPLG00000004209
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031998
87586 - 160925
73340
ENSAPLT00000017171
142056 - 167049
24994
ENSAPLT00000004362
132274 - 158602
26329
ENSAPLT00000043318
95717 - 160925
65209
ENSAPLT00000040558
142056 - 165018
22963