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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15480689_15490615_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
15480689 - 15490615
Intron Length:
9927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTAAC
U12 Branch Point Sequence:
CCGAGGCTAACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
70
37.3
Major BPS
51.7
0.04
1.3
55.3
40.3
Major PPT
86.6
0.82
0.7
84.2
23.8
Minor 5ss
31.6
-2.1
3.2
41.1
45.6
Minor BPS
36.7
-1
2.4
43.89
44.5

Associated Gene:

Gene:
C8orf48
Ensembl Gene ID:
ENSAPLG00000020502
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041252
15479150 - 15513390
34241