About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15486502_15490615_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
15486502 - 15490615
Intron Length:
4114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAC
U12 Branch Point Sequence:
CAGCACTTACTA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
70
37.3
Major BPS
61.4
0.28
1
53
33.7
Major PPT
84.7
0.78
0.7
81.6
29.7
Minor 5ss
31.6
-2.1
3.2
41.1
45.6
Minor BPS
46
-0.3
1.8
50.68
40.8

Associated Gene:

Gene:
C8orf48
Ensembl Gene ID:
ENSAPLG00000020502
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044421
15485674 - 15513390
27717