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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15490691_15501025_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15490691 - 15501025
Intron Length:
10335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAAAA
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTTTTCTGATTC
Flanking Amino Acid:
RSLWQRIKDKAEGRTELCER
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
76.9
33.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
88.1
0.86
0.8
83.9
31.1
Minor 5ss
28.2
-2.5
2.7
31.6
42.2
Minor BPS
55
0.14
1.7
67.58
38.2

Associated Gene:

Gene:
C8orf48
Ensembl Gene ID:
ENSAPLG00000020502
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044421
15485674 - 15513390
27717
ENSAPLT00000041252
15479150 - 15513390
34241