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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15504776_15510814_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15504776 - 15510814
Intron Length:
6039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTGTGGCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TAGTAATTGACA
Flanking Amino Acid:
QGNSVLKTHSEVTELPDEEL
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
61.9
0.27
1.1
54.6
44.8
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
52.7
0.08
1.8
65.73
40.1

Associated Gene:

Gene:
C8orf48
Ensembl Gene ID:
ENSAPLG00000020502
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044421
15485674 - 15513390
27717
ENSAPLT00000041252
15479150 - 15513390
34241