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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_155285_155948_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
155285 - 155948
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
CTCTCTTCAATG
Flanking Amino Acid:
IEEQTKKAQQELEEQTRRAM
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
83.5
0.75
0.8
80.5
31.5
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
56.5
0.06
1.7
58.73
44

Associated Gene:

Gene:
MSN
Ensembl Gene ID:
ENSAPLG00000004209
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031998
87586 - 160925
73340
ENSAPLT00000017171
142056 - 167049
24994
ENSAPLT00000004362
132274 - 158602
26329
ENSAPLT00000043318
95717 - 160925
65209
ENSAPLT00000040558
142056 - 165018
22963