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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15562086_15563631_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15562086 - 15563631
Intron Length:
1546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ACTTTTTTAACT
Flanking Amino Acid:
MEHITTPKVENVKLLDRY
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.2
30.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.3
0.75
0.8
77.7
35
Minor 5ss
32.8
-2
3.7
46.2
49.1
Minor BPS
78.2
0.96
1.1
85.39
35.1

Associated Gene:

Gene:
MTMR8
Ensembl Gene ID:
ENSAPLG00000003847
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003996
15561352 - 15581886
20535