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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15563755_15564435_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15563755 - 15564435
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGTA
5'SS Class:
major
3'SS Sequence:
CCTGTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATTTGATTATCT
Flanking Amino Acid:
ASSEVRKETWILHHHIASVE
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.1
36.6
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
81.7
0.71
0.8
80.3
31.8
Minor 5ss
41.9
-0.9
3.1
48.8
47.3
Minor BPS
52
0.14
2.2
79.65
42.1

Associated Gene:

Gene:
MTMR8
Ensembl Gene ID:
ENSAPLG00000003847
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003996
15561352 - 15581886
20535