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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15564599_15566976_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15564599 - 15566976
Intron Length:
2378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGGG
5'SS Class:
major
3'SS Sequence:
TTCTTCTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTTTTCTAACA
Flanking Amino Acid:
YTSLLKLSQPVKPEELYAFS
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
61.6
43.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
86.9
0.83
0.7
80.3
31.7
Minor 5ss
38.2
-1.3
3.1
49.7
46.5
Minor BPS
64.4
0.45
1.6
75.11
36.7

Associated Gene:

Gene:
MTMR8
Ensembl Gene ID:
ENSAPLG00000003847
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003996
15561352 - 15581886
20535