About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15569777_15571581_F


Intron Information:

Intron Rank:
6

Intron Class:
major-like

Intron Phase:
0

Intron Coordinates:
15569777 - 15571581

Intron Length:
1805

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTATCTTCA

5'SS Class:
weak_major

3'SS Sequence:
TTGAATTTGACAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTCAC

U12 Branch Point Sequence:
TTCCCTTGAATT

Flanking Amino Acid:
FMYVVDTRPKLNAMANRAAG

Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74.6
0.58
1.2
70.3
36.5

Major BPS
85
0.87
0.8
85.6
23

Major PPT
69.4
0.44
1.1
64.8
45.3

Minor 5ss
57.5
0.25
1.9
68.3
42.4

Minor BPS
64.4
0.53
1.4
78.06
38.6

Associated Gene:

Gene:
MTMR8

Ensembl Gene ID:

Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

15561352 - 15581886
20535