About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15573497_15574636_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15573497 - 15574636
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
GTCTTCTTCACA
Flanking Amino Acid:
VMDAGVFLAKAVKDENASVL
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
81.1
0.7
0.8
75.6
33
Minor 5ss
35.9
-1.6
3.3
50.8
45.8
Minor BPS
62.6
0.39
1.8
71.26
41.2

Associated Gene:

Gene:
MTMR8
Ensembl Gene ID:
ENSAPLG00000003847
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003996
15561352 - 15581886
20535