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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15576471_15578537_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15576471 - 15578537
Intron Length:
2067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTGTTTGTATTT
Flanking Amino Acid:
WIAMGHKFSHRCGHLDGDPK
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
78
0.63
0.9
70.3
41.2
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
47.5
-0.1
2.2
70.24
42.1

Associated Gene:

Gene:
MTMR8
Ensembl Gene ID:
ENSAPLG00000003847
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003996
15561352 - 15581886
20535