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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15578739_15579153_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15578739 - 15579153
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
TTGTAATTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTGATT
Flanking Amino Acid:
GTCHKEREDLKIFEKTHSLW
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
0.9
68.6
39.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.3
0.46
1.1
65.6
44.3
Minor 5ss
35.9
-1.6
2.8
40.5
39.9
Minor BPS
69.2
0.68
1.5
87.65
31

Associated Gene:

Gene:
MTMR8
Ensembl Gene ID:
ENSAPLG00000003847
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003996
15561352 - 15581886
20535