About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15579283_15580245_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15579283 - 15580245
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
CCCTGTTCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTAAT
U12 Branch Point Sequence:
GGCTGCCTAATT
Flanking Amino Acid:
LQPNTLPFSFQFWCGMYNRF
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.5
33.5
Major BPS
64.2
0.35
1.3
65.8
39.5
Major PPT
65.7
0.35
1
62.9
37.5
Minor 5ss
42.7
-0.8
2.8
58.2
40.5
Minor BPS
48.3
-0
2.1
66.07
44.6

Associated Gene:

Gene:
MTMR8
Ensembl Gene ID:
ENSAPLG00000003847
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003996
15561352 - 15581886
20535