Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15606910_15607471_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15606910 - 15607471

Intron Length:

562

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCACCA

5'SS Class:

major

3'SS Sequence:

GTTTTTTTCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTGAG

U12 Branch Point Sequence:

GTTTTTTTGTTT

Flanking Amino Acid:

RQPPEAPGAYSASHRSQIQY

Intron Amino Acid Position:

1026

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.1

0.38

1.2

56.4

42.8

Major BPS

48.9

-0

1.5

46.7

38.9

Major PPT

87.3

0.84

0.8

80.5

Minor 5ss

36.7

-1.5

3.2

49.5

46.2

Minor BPS

44.5

-0.3

3.4

74.33

37.3

Associated Gene:

Gene:

AMER1

Ensembl Gene ID:

ENSAPLG00000022622

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032002

15603739 - 15607985

4247

ENSAPLT00000029482

15603739 - 15611189

7451