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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15607583_15610933_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15607583 - 15610933
Intron Length:
3351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTCT
5'SS Class:
major
3'SS Sequence:
GTGTGGTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTGTTTTAAAA
Flanking Amino Acid:
SGNGPFSSTASSDGEKKQFI
Intron Amino Acid Position:
1063

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.3
35
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.7
0.51
1
64.5
45.9
Minor 5ss
45.3
-0.5
2.4
60.2
44.2
Minor BPS
60.5
0.32
1.5
68.55
37.9

Associated Gene:

Gene:
AMER1
Ensembl Gene ID:
ENSAPLG00000022622
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029482
15603739 - 15611189
7451