About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_156110_156602_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156110 - 156602
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TTTGTCCCCACT
Flanking Amino Acid:
HDQQKTQEQLAAEMAELTAR
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
68.8
42.2
Major BPS
62
0.3
1
53
34.1
Major PPT
89.3
0.88
0.6
84.3
23.5
Minor 5ss
32.2
-2
3.1
37.3
42.5
Minor BPS
44.9
-0.3
2.3
72.26
44.7

Associated Gene:

Gene:
MSN
Ensembl Gene ID:
ENSAPLG00000004209
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031998
87586 - 160925
73340
ENSAPLT00000017171
142056 - 167049
24994
ENSAPLT00000004362
132274 - 158602
26329
ENSAPLT00000043318
95717 - 160925
65209
ENSAPLT00000040558
142056 - 165018
22963