About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15725776_15730302_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15725776 - 15730302
Intron Length:
4527

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCT|GCAGGAGGG
5'SS Class:
weak_major
3'SS Sequence:
TCTCTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
CCTGTATTGACT
Flanking Amino Acid:
WVAGCEGSAPLISGGSTVRA
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.8
0.09
1.5
51.1
42.6
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
21
-3.3
4.2
38.1
46.8
Minor BPS
50.1
0.08
1.8
67.11
44.2

Associated Gene:

Gene:
ARHGEF9
Ensembl Gene ID:
ENSAPLG00000004554
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004685
15725632 - 15784457
58826