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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15728092_15730310_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
15728092 - 15730310
Intron Length:
2219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCAGGAA
5'SS Class:
weak_major
3'SS Sequence:
CACAGCTGATCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TCTCTCTCCACA
Flanking Amino Acid:
RSCGGSTVRAEA
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.7
0.21
1.1
51.5
34.8
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
54
0.09
1.1
50.8
42.3
Minor 5ss
21.5
-3.3
3.4
24.9
39.7
Minor BPS
48.9
-0
2
64.43
42.1

Associated Gene:

Gene:
ARHGEF9
Ensembl Gene ID:
ENSAPLG00000004554
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018956
15728084 - 15753496
25413