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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_157360_158437_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
157360 - 158437
Intron Length:
1078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCACAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
CTTTCCACAAAG
Flanking Amino Acid:
KNERVQKHLKALSSELANAR
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
62.7
0.29
1
63.4
30.8
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
49.4
-0.1
2
62.25
45

Associated Gene:

Gene:
MSN
Ensembl Gene ID:
ENSAPLG00000004209
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004362
132274 - 158602
26329
ENSAPLT00000043318
95717 - 160925
65209
ENSAPLT00000040558
142056 - 165018
22963
ENSAPLT00000031998
87586 - 160925
73340
ENSAPLT00000017171
142056 - 167049
24994