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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15740494_15746457_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15740494 - 15746457
Intron Length:
5964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATGGATT
Flanking Amino Acid:
YIKHLKDICEGYLKQCRKRR
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.6
0.8
0.8
80.1
32
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
51.6
0.13
1.7
74.69
35.7

Associated Gene:

Gene:
ARHGEF9
Ensembl Gene ID:
ENSAPLG00000004554
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018956
15728084 - 15753496
25413
ENSAPLT00000004685
15725632 - 15784457
58826