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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15775984_15784292_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15775984 - 15784292
Intron Length:
8309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTATAAACT
5'SS Class:
weak_major
3'SS Sequence:
GAGCTGCTCCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CAATCAT
U12 Branch Point Sequence:
TCCCCCCCAATC
Flanking Amino Acid:
EVKQKNIFQISVPPAYPPPQ
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.5
0.18
1
59.6
37
Major BPS
68.1
0.45
1.1
69.7
35.6
Major PPT
49.9
-0
1.1
44.9
41.3
Minor 5ss
43.4
-0.7
3
60.2
39.4
Minor BPS
47.1
-0.2
1.9
56.71
42

Associated Gene:

Gene:
ARHGEF9
Ensembl Gene ID:
ENSAPLG00000004554
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004685
15725632 - 15784457
58826