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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15840385_15874549_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15840385 - 15874549
Intron Length:
34165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
ACALLLLLTPGLAEDKFFEK
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.3
36.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
76.5
0.6
1.1
77.1
41.8
Minor 5ss
32.2
-2
3.4
44
43.3
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037259
15840324 - 15965992
125669
ENSAPLT00000009682
15840324 - 15965992
125669
ENSAPLT00000039596
15840324 - 15967769
127446
ENSAPLT00000037747
15840324 - 15965992
125669