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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15878729_15892115_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15878729 - 15892115
Intron Length:
13387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTGTGCTGATCG
Flanking Amino Acid:
LMAKIYVFVRDDRNPFVEIH
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
81.5
0.71
0.7
76.7
25.3
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
47.6
-0.3
2.2
60.02
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037259
15840324 - 15965992
125669
ENSAPLT00000009682
15840324 - 15965992
125669
ENSAPLT00000039596
15840324 - 15967769
127446
ENSAPLT00000037747
15840324 - 15965992
125669