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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_158834_164637_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158834 - 164637
Intron Length:
5804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAAGTCT
5'SS Class:
major
3'SS Sequence:
CCATTTATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTTTCTCCATT
Flanking Amino Acid:
NLYWGKSEIWR*
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
66.4
39.9
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
71.3
0.48
0.8
69.8
35
Minor 5ss
38.3
-1.3
3.4
48
47.6
Minor BPS
59.2
0.37
2
83.48
38.1

Associated Gene:

Gene:
MSN
Ensembl Gene ID:
ENSAPLG00000004209
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040558
142056 - 165018
22963