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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_158834_167000_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158834 - 167000
Intron Length:
8167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAAGTCT
5'SS Class:
major
3'SS Sequence:
CACTTTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TGATACTTATCT
Flanking Amino Acid:
NLYWGKSEIWDLMNDSGCFS
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
66.4
39.9
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
73.6
0.53
0.9
69.3
35.3
Minor 5ss
38.3
-1.3
3.4
48
47.6
Minor BPS
62
0.45
1.8
79.16
42.2

Associated Gene:

Gene:
MSN
Ensembl Gene ID:
ENSAPLG00000004209
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017171
142056 - 167049
24994