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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15897950_15899384_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15897950 - 15899384
Intron Length:
1435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTTGA
5'SS Class:
major
3'SS Sequence:
TTCCAACTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTTTCCAACT
Flanking Amino Acid:
ELVWTCPNGRRPYPRRKIDQ
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1
64.8
37.9
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
76.1
0.59
0.9
66.2
39.5
Minor 5ss
35.4
-1.7
2.8
36.6
41.7
Minor BPS
59.8
0.39
1.9
84.49
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037259
15840324 - 15965992
125669
ENSAPLT00000009682
15840324 - 15965992
125669
ENSAPLT00000039596
15840324 - 15967769
127446
ENSAPLT00000037747
15840324 - 15965992
125669