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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15900271_15902241_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15900271 - 15902241
Intron Length:
1971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
ACTTTCACAACA
Flanking Amino Acid:
VDAFPRPTVTWYKDGKLIKD
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
77.7
0.69
1
81
30.2
Major PPT
69.4
0.44
1
63.8
36.2
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
52.6
0.08
1.8
66.71
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037747
15840324 - 15965992
125669
ENSAPLT00000037259
15840324 - 15965992
125669
ENSAPLT00000009682
15840324 - 15965992
125669
ENSAPLT00000039596
15840324 - 15967769
127446