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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15925167_15931048_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15925167 - 15931048
Intron Length:
5882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
TGTGACTGAACT
Flanking Amino Acid:
EERSIEFYVSDVPFGLQTDP
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
80.5
0.69
0.7
72.7
32.1
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
59.8
0.39
1.8
79.08
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039596
15840324 - 15967769
127446
ENSAPLT00000037259
15840324 - 15965992
125669
ENSAPLT00000009682
15840324 - 15965992
125669