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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15925167_15933476_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15925167 - 15933476
Intron Length:
8310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGACTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCCTTTGTGACT
Flanking Amino Acid:
EERSIEFYVSAKAAPYVIQN
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.2
0.61
0.9
70
40.3
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
49.5
0.04
2
69.33
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037747
15840324 - 15965992
125669