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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15931343_15933476_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15931343 - 15933476
Intron Length:
2134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGACTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCCTTTGTGACT
Flanking Amino Acid:
LEQHTQLLVRAKAAPYVIQN
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
71.4
40.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.2
0.61
0.9
70
40.3
Minor 5ss
30
-2.3
3.1
41.6
45
Minor BPS
49.5
0.04
2
69.33
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039596
15840324 - 15967769
127446
ENSAPLT00000037259
15840324 - 15965992
125669
ENSAPLT00000009682
15840324 - 15965992
125669