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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15935049_15935160_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15935049 - 15935160
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTAACCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTACATTTAACC
Flanking Amino Acid:
DSTSAFIKIQGSEEKSNIEV
Intron Amino Acid Position:
728

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
70.9
0.47
0.9
63.1
37.7
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
60.4
0.31
1.5
66.93
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037747
15840324 - 15965992
125669
ENSAPLT00000037259
15840324 - 15965992
125669
ENSAPLT00000009682
15840324 - 15965992
125669
ENSAPLT00000039596
15840324 - 15967769
127446