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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15935268_15936567_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15935268 - 15936567
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGAG
5'SS Class:
major
3'SS Sequence:
ACCCTGTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAC
U12 Branch Point Sequence:
TTCTCCAAACCC
Flanking Amino Acid:
LTLFIRKLRKPDATDIKTGY
Intron Amino Acid Position:
764

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
36.3
Major BPS
53.3
0.08
1.1
61.3
34.4
Major PPT
71.9
0.49
0.9
68.9
36.5
Minor 5ss
31.5
-2.1
3.4
38.6
40.8
Minor BPS
48
-0.1
2.2
67.02
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037259
15840324 - 15965992
125669
ENSAPLT00000009682
15840324 - 15965992
125669
ENSAPLT00000039596
15840324 - 15967769
127446
ENSAPLT00000037747
15840324 - 15965992
125669