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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15936704_15938020_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15936704 - 15938020
Intron Length:
1317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAG
U12 Branch Point Sequence:
TCATTCTCGACT
Flanking Amino Acid:
WEFPRDRLRLGKTLGHGAFG
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
60.5
0.26
1.7
69.7
44.2
Major PPT
77.6
0.62
0.8
69.8
36.7
Minor 5ss
28.5
-2.5
3.1
31.8
42.6
Minor BPS
61.5
0.44
1.6
75.62
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037259
15840324 - 15965992
125669
ENSAPLT00000039596
15840324 - 15967769
127446
ENSAPLT00000037747
15840324 - 15965992
125669