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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15936704_15940529_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15936704 - 15940529
Intron Length:
3826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTAAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTATCTTAAGC
Flanking Amino Acid:
WEFPRDRLRLECATTNECKA
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.7
0.53
1
71.2
38.4
Minor 5ss
28.5
-2.5
3.1
31.8
42.6
Minor BPS
69
0.58
1.6
78.58
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009682
15840324 - 15965992
125669