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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15938126_15940529_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15938126 - 15940529
Intron Length:
2404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATATC
5'SS Class:
major
3'SS Sequence:
TTATCTTAAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTATCTTAAGC
Flanking Amino Acid:
CKTVAVKMLKECATTNECKA
Intron Amino Acid Position:
746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
78.8
35.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.7
0.53
1
71.2
38.4
Minor 5ss
38.6
-1.3
3.1
54
43.2
Minor BPS
69
0.58
1.6
78.58
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039596
15840324 - 15967769
127446
ENSAPLT00000037747
15840324 - 15965992
125669