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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15938126_15943397_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15938126 - 15943397
Intron Length:
5272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATATC
5'SS Class:
major
3'SS Sequence:
ACTGTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TGCTTCAAAACT
Flanking Amino Acid:
CKTVAVKMLKGPLMVIVEYC
Intron Amino Acid Position:
844

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
78.8
35.4
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
80.8
0.69
0.9
77.2
36.4
Minor 5ss
38.6
-1.3
3.1
54
43.2
Minor BPS
51.4
0.12
2
72.99
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037259
15840324 - 15965992
125669