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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15943487_15944833_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15943487 - 15944833
Intron Length:
1347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
GTGCCATTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAACAAT
U12 Branch Point Sequence:
CGATCCAAAGCT
Flanking Amino Acid:
GKRGDFIAYKSQENSDQAEK
Intron Amino Acid Position:
877

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
57.4
0.18
1.3
65.4
38
Major PPT
68.2
0.41
0.9
58.8
42.1
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
44.7
-0.3
2.1
62.68
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009682
15840324 - 15965992
125669
ENSAPLT00000039596
15840324 - 15967769
127446
ENSAPLT00000037747
15840324 - 15965992
125669
ENSAPLT00000037259
15840324 - 15965992
125669