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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15946853_15951071_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15946853 - 15951071
Intron Length:
4219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTTTACATCACT
Flanking Amino Acid:
GVLLWEIFSLGASPYPGVQI
Intron Amino Acid Position:
1043

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.8
0.67
0.8
79.2
28
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
51.1
0.12
2.2
79.1
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039596
15840324 - 15967769
127446
ENSAPLT00000037747
15840324 - 15965992
125669
ENSAPLT00000037259
15840324 - 15965992
125669
ENSAPLT00000009682
15840324 - 15965992
125669