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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_15953770_15957045_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15953770 - 15957045
Intron Length:
3276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTTTGCTACACA
Flanking Amino Acid:
PVEKEKVIHEESDSGMVLTS
Intron Amino Acid Position:
1180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
78.1
0.63
0.9
73
36.4
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
49.7
-0
2.5
74.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009277
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039596
15840324 - 15967769
127446
ENSAPLT00000037747
15840324 - 15965992
125669
ENSAPLT00000037259
15840324 - 15965992
125669
ENSAPLT00000009682
15840324 - 15965992
125669