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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16033557_16037201_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16033557 - 16037201
Intron Length:
3645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTAT
5'SS Class:
major
3'SS Sequence:
TGCTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TTGAAAAAAATT
Flanking Amino Acid:
AANLRLSERQVKIWFQNRRA
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
69
38.3
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
82.6
0.73
0.8
77.1
31.6
Minor 5ss
36.4
-1.5
3.7
54.5
49.7
Minor BPS
39.7
-0.7
2.1
59.94
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009237
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009606
16023759 - 16037456
13698